Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSHSPIATVAQALRRAERILVITGAGLSADSGMPTYRGLGGLYNGRTEEGLPIEAALSGPMLRRDPALCWKYLAELGKACLAARPNAGHEAIAELQKHKPECWVLTQNIDGFHRQAGSPAERLIEIHGELAPLYCQSCGAESGGLEEHLHGQLP--PRCAACGGVLRPPVVLFEEMLPEEAIDTLYRELRKGFDAVLVVGTTASFPYIVEPV----LRTRQAGGFTAEVNPGVTDLSERVDVKMTGRALDIMPQVVSHIYR
1M2N Chain:B ((7-242))
-----------KTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFA-----KDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAGS--RNVIHLHGSLRVVRCTSC---NNSFEVESAPKIPPLPKCDKCGSLLRPGVVWAGEMLPPDVLDAAMREVERA-DVIIVAGTSA----VVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRK
General information:
TITO was launched using:
RESULT:
Template:
1M2N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98770 for 1897 contacts (-52.1/contact) +
2D Compatibility (PS) -24825 + (NN) -13060 + (LL) 1156
1D Compatibility (HY) -17200 + (ID) 4350
Total energy: -157049.0 ( -82.79 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_1M2N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2N-query.scw
PDB file :
Tito_Scwrl_1M2N.pdb
: