Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLIVYAHPEPRSLNGALKDFAVARLEAAGHAVQVSDLYAMGWKA-VLDAGDSLEREASERFDPSATSLRAFENGWQSVDIAGEQDKLRWADTLILQFPLWWFSMPAILKGWIDRVYACGFAYGVGEHSDSHWGDRYGEGRMQGKRAMLVVTAGGWESHYAARGINGPMDDLLFPIHHGILHYPGFEVLPPFVVYRSGRIDAERFAALSEQLGRRLDDLQRAAPIPFRRQNGGDYLIPALTLRDELAPQRAGFAMHLAE
3TZB Chain:D ((5-222))
-KVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDS--------GLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFG-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TZB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142199 for 1691 contacts (-84.1/contact) +
2D Compatibility (PS) -23005 + (NN) -7323 + (LL) 1788
1D Compatibility (HY) -17600 + (ID) 4600
Total energy: -192939.0 ( -114.10 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_3TZB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TZB-query.scw
PDB file :
Tito_Scwrl_3TZB.pdb
: