Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPREHGKRSIDNETRSALKRQRPAVIWLTGLSGAGKSTIASALELALFEQKKHTFLLDGDDLRLGLCRNLGYSDEDRTENIRRIAEVAKILLEAGLIVIVATISPFSRDRRLSRELIGIEHFIEVFVDTPLSECERRDPKGLYRKARSGKIENFTGIDSIYETPAQPNITID-TLSEDPDLAVKRIISYLETNQPA
4FXP Chain:B ((11-194))
---------SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDNKGYL
General information:
TITO was launched using:
RESULT:
Template:
4FXP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88293 for 1469 contacts (-60.1/contact) +
2D Compatibility (PS) -20401 + (NN) -10081 + (LL) 228
1D Compatibility (HY) -15600 + (ID) 4350
Total energy: -138497.0 ( -94.28 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_4FXP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FXP-query.scw
PDB file :
Tito_Scwrl_4FXP.pdb
: