Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQVSVYRYNPDKDAAPYMQDFQVDTN-GKDVMVLDVLALIKEQDEGFSYRRSCREGVCGSDGMNINGKNGLACITPLSAAGLKGGKLVIRPLPGLPVIRDLVVDMSIFYKQYEKVKPFLQND-TPAPAIERLQTPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTKTEERLASLDDPFSVFRCRGIMNCVNVCPKGLNPTKAIGHVRNMLLQSGT
2WU5 Chain:F ((3-235))
-LEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
General information:
TITO was launched using:
RESULT:
Template:
2WU5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131182 for 1807 contacts (-72.6/contact) +
2D Compatibility (PS) -24593 + (NN) -13713 + (LL) 208
1D Compatibility (HY) -30000 + (ID) 8300
Total energy: -207580.0 ( -114.88 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_2WU5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WU5-query.scw
PDB file :
Tito_Scwrl_2WU5.pdb
: