Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPVLPLLLSLSLCA-----------PALADWSGPIEQPLWSLPAAPGLSRWLIVHNLSSAAADGLYHVEVLERRQGQQPWQFQRLAAHLALTEQALRASIVAPLKRGGVYPESYQFAYRQWQERQAAGQAPVCRRTVDECLRAPD
1I1J Chain:A ((1-106))
--GPMPKLADRKLCADQECSHPISMAVALQDYMAPDCRFL-----TIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLA-------------------------ARLGYFPSSI---VREDQTLKPGKVDVKTDKWDFYC-----
General information:
TITO was launched using:
RESULT:
Template:
1I1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30850 for 601 contacts (-51.3/contact) +
2D Compatibility (PS) -9731 + (NN) -1006 + (LL) 4236
1D Compatibility (HY) -2400 + (ID) 1000
Total energy: -40751.0 ( -67.81 by residue)
QMean score : 0.138
(partial model without unconserved sides chains):
PDB file :
Tito_1I1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1I1J-query.scw
PDB file :
Tito_Scwrl_1I1J.pdb
: