Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYVTPDLCDAYPELVQVVEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVDKDGKGKVLVVDGGGSLRRALLGDMLAEKAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNNGIIVSPQALKMPE
1J3L Chain:A ((1-159))
MEARTTDLSDLYPE-GEALPMVFKSFGGRARFAGRVRTLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGGNLARRAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADEDGLLLLPEPPSGVR
General information:
TITO was launched using:
RESULT:
Template:
1J3L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115604 for 1384 contacts (-83.5/contact) +
2D Compatibility (PS) -18509 + (NN) -14983 + (LL) 176
1D Compatibility (HY) -11600 + (ID) 3400
Total energy: -163920.0 ( -118.44 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_1J3L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J3L-query.scw
PDB file :
Tito_Scwrl_1J3L.pdb
: