Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQMMQMYQQVGPAQFSAMIGQFAPYFASIAPQFVELRPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDASIPAGHRWIPRGMTVEYLAKAT-G-DVRAVADGSQIDWQAT-G-NLVVPVVAYVDDKPVFRAEITMYVSQA
1YOC Chain:A ((3-147))
MSQMMQMYQQVGPAQFSAMIGQFAPYFASIAPQFVELRPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDASIPAGHRWIPRGMTVEYLAKATGDVRAVADGSQI----DWQATGNLVVPVVAYVDDKPVFRAEITMYVSQA
General information:
TITO was launched using:
RESULT:
Template:
1YOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102032 for 1090 contacts (-93.6/contact) +
2D Compatibility (PS) -15394 + (NN) -5352 + (LL) 404
1D Compatibility (HY) -18400 + (ID) 6400
Total energy: -147174.0 ( -135.02 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1YOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YOC-query.scw
PDB file :
Tito_Scwrl_1YOC.pdb
: