Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHDEREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSE---SIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLLN
4Y17 Chain:C ((10-240))
----RRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFNEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRLNDEIV--MTPEMN--FSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLIH
General information:
TITO was launched using:
RESULT:
Template:
4Y17.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132621 for 1714 contacts (-77.4/contact) +
2D Compatibility (PS) -24429 + (NN) -11495 + (LL) 532
1D Compatibility (HY) -14000 + (ID) 3850
Total energy: -185863.0 ( -108.44 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_4Y17.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y17-query.scw
PDB file :
Tito_Scwrl_4Y17.pdb
: