Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDNAIPQGFEDAVELRRKNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPDWEWYNIKVFETDDPNHFWVECDGHGKILFPGYPEGYYENHFLHSFELDDGKIKRNREFMNVFQQLRALSIPVPQIKREGIPT
3CNM Chain:B ((37-185))
-------------VAARQHNRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPDWVWTDIQIFETQDPNWFWVECRGEGAIVFPGYPRGQYRNHFLHSFRFENGLIKEQREFMNPCEQFRSLGIEVPEVRRDGLPS
General information:
TITO was launched using:
RESULT:
Template:
3CNM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26511 for 982 contacts (-27.0/contact) +
2D Compatibility (PS) -16195 + (NN) -7061 + (LL) 688
1D Compatibility (HY) -15600 + (ID) 4600
Total energy: -69279.0 ( -70.55 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_3CNM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CNM-query.scw
PDB file :
Tito_Scwrl_3CNM.pdb
: