Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNMPSILSLAVAGLLVAPVHAATAPSEPFQPPAESSLPDNAFGEMVRQGQALFVETRKNAPHLVGNQLNCVNCHLDQ----GRRANSAPQWAAYPVYPAFRAKNNKVNTFAERLQGCFQFSMNGKVPAADSPEIKALTVYAYWLASQAPTGVSLPGRGYPDVA---PPEGGYSIERGAKVYAAQCAICHGADGQGQM-ALGQTVFPPLWGAQSFNWGAGMHRINTAASFIKYNMPLGKPGTLSDRDAWDVAAFMNSHERP--QDPRLVDGSVEKTRQKFHANDGVNLYGQKVNGVLLGQGI |
4WQD Chain:A ((5-237)) | -------------------------TVALTVPAAALLPDGALGESIVRGRRYLSDTPAQLPDFVGNGLACRHCHPGRDGEVGTEANAAPFVGVVGRFPQYSARHGRLITLEQRIGDCFERSLNGRALALDHPALIDMLAYMSWLSQGVPVGAVVAGHGIPTLTLEREPDGVH----GEALYQARCLACHGADGSGTLDADGRYLFPPLWGPRSFNTGAGMNRQATAAGFIKHGM------SLSDEEAWDVAGFVLTHPRPLF--------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WQD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52583 for 1726 contacts (-30.5/contact) +
2D Compatibility (PS) -22913 + (NN) -12217 + (LL) 3736
1D Compatibility (HY) -12800 + (ID) 4550
Total energy: -101327.0 ( -58.71 by residue)
QMean score : 0.475
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