Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKKSLLPLGLAIGLASLAASPLIQASTYTQTKYPIVLAHGMLGFDNILGV-DYWFGIPSALRRDGAQVYVTEVSQL---DTSEVRGEQLLQQVEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPHKGSDTADFLRQI---PPGSAGEAVLSGLVNSLGALISFLSSGSTGTQNSLGSLESLNSEGAARFNAKYPQ---GIPTSACGEGA--YKVNGVSY--YSWSGSS-------------------PLT---NFLDPSD-AFLGASSLTFKNGTA-NDGLVGTCSSHLGMVIRDNYRMNHLDEVNQVFGLTSLFETSPVSVYRQHANRLKNASL |
1OIL Chain:B ((1-316)) | -------------------------ADNYAATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPHRGSEFADFVQGVLAYDPTGLSSTVIAAFVNVFGILTS--SSNNT-NQDALAALKTLTTAQAATYNQNYPSAGLGAPGS-CQTGAPTETVGGNTHLLYSWAGTAIQPTISVFGVTGATDTSTIPLVDPANALDPSTLALFGTGTVMVNRGSGQNDGVVSKCSALYGQVLSTSYKWNHLDEINQLLGVRGANAEDPVAVIRTHANRLK---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OIL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -42115 for 2353 contacts (-17.9/contact) +
2D Compatibility (PS) -29990 + (NN) -9315 + (LL) 2520
1D Compatibility (HY) -23200 + (ID) 6600
Total energy: -108700.0 ( -46.20 by residue)
QMean score : 0.426
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