Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLNG
4GMD Chain:D ((5-212))
-TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPV------------LDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLN-
General information:
TITO was launched using:
RESULT:
Template:
4GMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76986 for 1497 contacts (-51.4/contact) +
2D Compatibility (PS) -22638 + (NN) -18440 + (LL) 1052
1D Compatibility (HY) -25200 + (ID) 9800
Total energy: -152012.0 ( -101.54 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_4GMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GMD-query.scw
PDB file :
Tito_Scwrl_4GMD.pdb
: