Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEPNLRGNGKVALVTGAARGIGLGISAWLIAEGWQVVLADNDRERGARVAEALGEHAWFVAMDVAQEGQVAMSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAKYCTPYLRAHNGAIVNIASTRAHQSEPDSEAYAASKGGLLALTHALAASLGPDIRVNALSPGWIDTREAAEREAAPLTELDHDQHLVGRVGTVEDVASLVAWLLSEDAGFVTGQEFLVDGGMTRKMIYLD
3GED Chain:B ((6-235))
-------------IVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHG-DVADPLTLKKFVEYAMEKLQRIDVLVNNACRGS--KGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVT---E-----FTQEDCAAIPAGKVGTPKDISNMVLFLCQQD--FITGETIIVDGGMSKRMIY--
General information:
TITO was launched using:
RESULT:
Template:
3GED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125986 for 1862 contacts (-67.7/contact) +
2D Compatibility (PS) -24079 + (NN) -6754 + (LL) 1532
1D Compatibility (HY) -19200 + (ID) 4850
Total energy: -179337.0 ( -96.31 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_3GED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GED-query.scw
PDB file :
Tito_Scwrl_3GED.pdb
: