Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAKEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFPEHLTVRFTDVQFYETADPDLAIGEFHGDGVATVSGGKLAQDYISVLRTRDGQILLYRDFWNPLRHLEALGGVEAAAKIVQGA
4J8T Chain:C ((1-125))
MNAKEIVVHALRLLENGDARGWCDLFHPEGVLEYPYPPPGYKTRFEGRETIWAHMRLFPEYMTIRFTDVQFYETADPDLAIGEFHGDGVH-----KLAADYISVLRTRDGQILLYRLFFNPLRVL----------------
General information:
TITO was launched using:
RESULT:
Template:
4J8T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57304 for 847 contacts (-67.7/contact) +
2D Compatibility (PS) -12831 + (NN) -8329 + (LL) 1232
1D Compatibility (HY) -18000 + (ID) 5350
Total energy: -100582.0 ( -118.75 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_4J8T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J8T-query.scw
PDB file :
Tito_Scwrl_4J8T.pdb
: