Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD
4GGQ Chain:D ((106-209))
----LKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV-----
General information:
TITO was launched using:
RESULT:
Template:
4GGQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58937 for 778 contacts (-75.8/contact) +
2D Compatibility (PS) -10439 + (NN) 6053 + (LL) 328
1D Compatibility (HY) -7600 + (ID) 2700
Total energy: -73295.0 ( -94.21 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_4GGQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GGQ-query.scw
PDB file :
Tito_Scwrl_4GGQ.pdb
: