Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDKILSVEHLMMHFGGIKALNDVNLDVERGSITALIGPNGAGKTTVFNCLTGFYKATGGNILLNTQGRTTDVIQVLGEPFQLDDFVKPPQLGSRLYYKMFGGTHLVNRAGLARTFQNIRLFKDMSVVENLLVAQHMFVNRNLLAGILNTPGYRR---AESEALDHAFYWLEVVDLVDCANRLAGEMSYGQQRRLEIARAMCTRPELICLDEPAAGLNPAETHALSNIVRYLRDHHGITVLLIEHDMGMVMNISDHIIVLDHGDVIARGNPEQ----IRHDEKVIAAYLGADEEELS
1G9X Chain:B ((6-256))
---EILRTENIVKYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK------EPAELYHY------------------------GIVRTFQTPQPLKEMTVLENLLIGE-----INPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK-AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIYIG-------
General information:
TITO was launched using:
RESULT:
Template:
1G9X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -194447 for 1962 contacts (-99.1/contact) +
2D Compatibility (PS) -26153 + (NN) -12360 + (LL) 2984
1D Compatibility (HY) -25200 + (ID) 5000
Total energy: -260176.0 ( -132.61 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_1G9X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G9X-query.scw
PDB file :
Tito_Scwrl_1G9X.pdb
: