Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLPSGDQPAEPGNA
4J6Y Chain:E ((4-70))
---GHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL------------
General information:
TITO was launched using:
RESULT:
Template:
4J6Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44223 for 398 contacts (-111.1/contact) +
2D Compatibility (PS) -7154 + (NN) -729 + (LL) -192
1D Compatibility (HY) -11200 + (ID) 3350
Total energy: -66848.0 ( -167.96 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_4J6Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J6Y-query.scw
PDB file :
Tito_Scwrl_4J6Y.pdb
: