Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFNTEVQPGICMEPDAITQEYVFNHTMLRVKDPKRSLDFYSRVLGMRLLRRLDFEEGRFSLYFLAMTRGEEVPDAVDERQRYTFGRQSVLELTHNWGSESDDSQ-YHNGNQDPRGFGHICFSVPDLVAACERFETLGVNFVKPLDRG-MKNVAFISDPDGYWVEIVQASLNGEMGRG
4PV5 Chain:B ((19-174))
-----------CSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEIL-----------
General information:
TITO was launched using:
RESULT:
Template:
4PV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78000 for 1018 contacts (-76.6/contact) +
2D Compatibility (PS) -16811 + (NN) -10161 + (LL) 820
1D Compatibility (HY) -18000 + (ID) 4550
Total energy: -126702.0 ( -124.46 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4PV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PV5-query.scw
PDB file :
Tito_Scwrl_4PV5.pdb
: