Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIG-EEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRGIVVDRSLRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNPSQVA-YGPMPVTVKTPACPLVVSPPPRGMDGQWLV-EGSGTDLKVLCRDTAGRVIGYALTGAAVNEKLALNKELPGLMA |
| 3KLJ Chain:A ((8-359)) | --KSTKILILGAGPAGFSAAKAALGKC--DDITMINSEKYLPYYRPRLNEIIAKNKSIDDIL-IKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHA--DEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM-------------GDLIRSSCVITAVGVKPNLDFIKDTEIASKRGILVNDHMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGEDASYSEIIPSP-ILKVSGISIISCGDIENNKPSKVFRSTQEDKYIVCML-KENKIDAAAVIGDVSLG------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KLJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -288642 for 3027 contacts (-95.4/contact) +
2D Compatibility (PS) -37650 + (NN) -16788 + (LL) 2312
1D Compatibility (HY) -17600 + (ID) 3600
Total energy: -361968.0 ( -119.58 by residue)
QMean score : 0.414
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