Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPVVLITGAAGGLGRAIAKRFAQSHWRIAATDVDKEG------LHALNAQVPLDASGVADLRSADNCHTLMSKILARTGRLDALVNAAGVWREGPVENFTEEDFDLVLGVNLKASFYMCQAAIPYLKENQ-GSIVNISSDSGRQAYRGSAAYCASKAALTMLSKTLALELAEQGVRVNAVSPADIATPMLDYQAERYGMGNPDGYKRALLKDYPQGKAARFIRPEEVAELVWYLCGPQAEAITGADLAVDFGLSAGR
3GK3 Chain:C ((27-266))
----VAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAV-DVADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMV----------------AKILPQIPVG---RLGRPDEVAALIAFLCSDDAGFVTGADLAINGGM----
General information:
TITO was launched using:
RESULT:
Template:
3GK3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152090 for 1884 contacts (-80.7/contact) +
2D Compatibility (PS) -23770 + (NN) -10456 + (LL) 760
1D Compatibility (HY) -16000 + (ID) 4200
Total energy: -205756.0 ( -109.21 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_3GK3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GK3-query.scw
PDB file :
Tito_Scwrl_3GK3.pdb
: