Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYRPARVTSTSRFLNPYVVCFIVVAGVVILAVTIALLVYFLAFDQKSYFYRSSFQLLNVEYNSQLNSPATQEYRTLSGRIESLITKTFKESNLRNQFIRAHVAKLRQDGSGVRADVVMKFQFTRNNNGASMKSRIESVLRQMLNNSGNLEINPSTEITSLTDQAAANWLINECGAGPDLITLSEQRILGGTEAEEGSWPWQVSLRLN---NAHHCGGSLINNMWILTAAHCFRSNSNPRDWIATSGISTTFP---------KLRMRVRNILIHNNYKSAT---HENDIALVRLENS--VTFTKDIHSVCLP---AATQNIPPGSTAYVTGWGAQEYAGHTVPE--------LRQGQVRIISNDVCNAPH--------SYNGAILSGMLCAGVPQGG-VDACQGDSGGPLV-QEDSRRLWFIVGIVSWGDQ-CGLPDKPGVYTRVTAYLDWIRQQTGI- |
| 1A0L Chain:A ((1-244)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPD------VKDLAA-LRVQLREQHLYYQDQLLPVSRIIVHPQFYT--AQI-GADIALLELE--EPVKVSSHVHTVTLPPAS---ETFPPGMPCWVTGWGDVDND------ERLPPPFPLKQVKVPIMENHICDA-KYHLGAYTGDDVRIVRDDMLCAGNT---RRDSCQGDSGGPLVCKVN--GTWLQAGVVSWGE-GCAQPNRPGIYTRVTYYLDWIHHYVPKK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A0L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -160387 for 1663 contacts (-96.4/contact) +
2D Compatibility (PS) -22395 + (NN) -8239 + (LL) 14260
1D Compatibility (HY) -19200 + (ID) 4600
Total energy: -200561.0 ( -120.60 by residue)
QMean score : 0.187
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