Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------MLRVV----EGIFIFVVVSESVFGVLGNGFIG--------------------LVNCIDCAKNKLSTIGFILTGLAISRIFLIWIIIT------------------------------------------------DGFIQIFSPNIYASGNLIEYISYF-------WVIGN--------QSSMWFATSLSIFYFLKIANFS----NYIFLWLKSRTNMVLPFMIVFLLISSLLNFAY---IAKILNDYKTKNDTVWDLNMYKSEYFIKQILLNLGVIFFFTL-SLITCIFLIISLWRHNR---QMQSNVTGLRDSNTEAHVKAMKVLISFIILFILYFIGMAIEISCFTVRENKLLL-MFGMTTTAIYPWGHSFILILGNSKLKQASLRVLQQLKCCEKRKNLRVT |
| 4NQA Chain:I ((5-389)) | KGPAPKMLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQ--VEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQL-----------------RFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDV------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NQA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -228680 for 1886 contacts (-121.3/contact) +
2D Compatibility (PS) -27355 + (NN) 9998 + (LL) 3196
1D Compatibility (HY) -8000 + (ID) 2350
Total energy: -253191.0 ( -134.25 by residue)
QMean score : 0.259
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