Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNIKTISVKDNNVRLDRYIRRIFPNLKQSVIEKSLRRGLIKVNDCKAKSSDRVNSGQIITIKYLDYIENANSDCKHNEKLVELLRSNILYEDEYILAINKPAGVIVQGGIKV-KISISDLLDQVR----EGETFKIVHRLDRDTSGAIIFARNANVARYLMEEFKGRRVKKTYLALTSGIPSKNRGVIDYPLVKKYVSGQEKVVIDKNSPQDATTRFSIIAKFKLNKPLVQRPIIQVADTQLYEHCNLSLSRVCHLSSLSSCYSSALLCHLSAPILVSSKTDHKQAHYTTFSIKKLDSSIMCRNDTRSVAYLKLQPITGRTHQLRTHLAYINCPILGDGKYGGKKAFV----------DGIASKIHLHSYSLSLKLPN-NKKITITAPLPEHIKKSIEALHTPF |
| 1V9F Chain:A ((76-314)) | -------------------------------------------------------------------------------FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKRT-HMAV-HPMGKPAVTHYRIMEHF-----------------------------------------------------------------------------------RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADF |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1V9F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -93849 for 1806 contacts (-52.0/contact) +
2D Compatibility (PS) -24046 + (NN) -7223 + (LL) 10556
1D Compatibility (HY) -8000 + (ID) 3250
Total energy: -125812.0 ( -69.66 by residue)
QMean score : 0.487
|
|
|