Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVSRLHCFVGYFDELLILLYLKLKWYYVIKYCYCCKFSEIDLIVSKKKELIFIEVKASLLGEDILISYLQYQSIVNSSKYFLSEKLSFLDYPIRYDLCF--------LSLTKRACLYKKCLA-
1IPI Chain:A ((1-114))
MYRK-----GAQAERELIKLLEKHGFAVVRSA---GSKKVDLVAGNGKKYLCIEVKVTK-KDHLYVGKRDMGRLIEFSRRFGGIPVLAVKFLNVGWRFIEVSPKIEKFVFTPSSGVSLEVLLG
General information:
TITO was launched using:
RESULT:
Template:
1IPI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67701 for 729 contacts (-92.9/contact) +
2D Compatibility (PS) -11044 + (NN) -717 + (LL) 980
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -83682.0 ( -114.79 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_1IPI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IPI-query.scw
PDB file :
Tito_Scwrl_1IPI.pdb
: