Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYPDFTLENKLSGVIAGVDEVGRGPLAGPVMSAAVVFTNR--N-IIIEGINDSKKLTAKNRQVLYEKIISVA-KFGIGMASVAEINSYNI--LQATKLSMERALVNLGIELDYVLVDGNQPP-K-V----------KWQVKSIVKGDSLSVSVAAASIVAKVARDQLMQELHNQYPEYNWYKNKGYGTKGHIDA-INLYGV-TEHHRKSFAPILNSTKRALL
1UAX Chain:A ((2-207))
--------------KVAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDILDDYYVLLVTPKEIDERHHSMNELEAEKFVVALNSLRIKPQKIYVDSADVDPKRFASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQKYGEFGSGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETARKIEERFRK
General information:
TITO was launched using:
RESULT:
Template:
1UAX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80261 for 1438 contacts (-55.8/contact) +
2D Compatibility (PS) -20227 + (NN) -10501 + (LL) 652
1D Compatibility (HY) -5200 + (ID) 2650
Total energy: -118187.0 ( -82.19 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_1UAX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UAX-query.scw
PDB file :
Tito_Scwrl_1UAX.pdb
: