Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
2NV1 Chain:D ((11-275))
--------RVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALER---------GVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEATTHFTDYKLIAELSKELG----------------------
General information:
TITO was launched using:
RESULT:
Template:
2NV1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167818 for 2223 contacts (-75.5/contact) +
2D Compatibility (PS) -28172 + (NN) -15294 + (LL) 2532
1D Compatibility (HY) -32400 + (ID) 10450
Total energy: -251602.0 ( -113.18 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_2NV1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NV1-query.scw
PDB file :
Tito_Scwrl_2NV1.pdb
: