Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHD-IKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELF-EATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTN--NFEGVYDMVLSSCDNLIDYIVKDANLKEG
2CWD Chain:C ((5-148))
-VRVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFPHVARRLTREDVLAYDHILVMDRENLEEVLRRFPEARGKVRLVLE--ELGGGEVQDPYYGDLEDFREVYWTLEAALQAFLD-----------
General information:
TITO was launched using:
RESULT:
Template:
2CWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85284 for 1188 contacts (-71.8/contact) +
2D Compatibility (PS) -14995 + (NN) -8244 + (LL) 1024
1D Compatibility (HY) -13200 + (ID) 2650
Total energy: -123349.0 ( -103.83 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_2CWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CWD-query.scw
PDB file :
Tito_Scwrl_2CWD.pdb
: