Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------------MLGKKNEEVLIDENLV---GGVIALDRLAKLNKANRTFKRAFYLSMVLNVAAVTSIVMMMPL------------KKTDIFVYGIDRYTGEFKIVKRSDARQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQFVDK---VRAEAIISSNIQREKVKNSPLTRLTFFITIKITPDTMENYEYITKKQVTI------------YYDFARGNSSQENLIINPFGFKVFDIQITDL-------------QNEQTVSEILRKIKEVESKNKALNK----------------- |
| 1AFR Chain:A ((1-345)) | MPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDP-RTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDRQVKL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1AFR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -39716 for 1822 contacts (-21.8/contact) +
2D Compatibility (PS) -25779 + (NN) -1417 + (LL) 176
1D Compatibility (HY) -7600 + (ID) 1400
Total energy: -75736.0 ( -41.57 by residue)
QMean score : 0.221
|
|
|