Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHYSYEAFLKDSLELAKQVERLCGIPEALVCVMRGGMTLVHFLSLHWNLREVYGINAISYDTTKRQNALKIENTPTIK----DHL--KTILVVDEIVDSGNSLEAVLKVLQDKHPDKKFYSASLFQKTSAKYKADAFLKDAPEWIDFFWEVDLKNLKSH
5BQP Chain:B ((29-148))
------------------------IPDVLIAVLTGGIIPAKLLSDLLDLKVIRYIDIKF---------------PVIRSVYTDSLEGKKVLVVDDVADTGETLEAVSNVITMFNP-AKVMTAALYLKPWSKRIPDFYYKQIDKWIIFPWDKWDVVRENS
General information:
TITO was launched using:
RESULT:
Template:
5BQP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69303 for 784 contacts (-88.4/contact) +
2D Compatibility (PS) -11060 + (NN) -4329 + (LL) 3076
1D Compatibility (HY) -9200 + (ID) 1900
Total energy: -92716.0 ( -118.26 by residue)
QMean score : 0.355
(partial model without unconserved sides chains):
PDB file :
Tito_5BQP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BQP-query.scw
PDB file :
Tito_Scwrl_5BQP.pdb
: