Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLSQALNKAKKELSPKGFRGGLESEILLGFVLQKERVFLHTHEHLELSHEEETRFFELVGKRLNDCPIEYLLGSCDFYGRSFFVNEHVLIPRPETEILVQKALNIISQYHLKEIGEIGIGSGCVSVSLALENPNLSIYASDISPKALEVALKNIERFCLKERVFLKQTRLW----DHMPTIEMLVSNPPYIARNYPLEKSVLKEPHEALFGGVKGDEILKEIVFLAAKLKIPFLVCEMGYDQLKSLKECLEFCGYDAEFYKDLSGFDRGFVGVLKSFLR
1NV8 Chain:B ((48-272))
--------------------------------IRKEDLFL-----LGVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF-FGRYDTSGKIVLMEIGEDQVEELKKIVS----DTVFLKDSAGKYRFLLLNRRS---
General information:
TITO was launched using:
RESULT:
Template:
1NV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115711 for 1652 contacts (-70.0/contact) +
2D Compatibility (PS) -23119 + (NN) -7702 + (LL) 2980
1D Compatibility (HY) -22400 + (ID) 4650
Total energy: -170602.0 ( -103.27 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_1NV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NV8-query.scw
PDB file :
Tito_Scwrl_1NV8.pdb
: