Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDYKRFKGKHANIVIEIISLLEKGVKKAQEILEKPDAGSYTQLENSSGDTPIKADLALDKFLEETFLSLENVKSVFSEEKETPVTK---ENGSYLIAYDPLDGSSVMEANFLVGTIIGVYEKD-------------YKAQNLVASLYVVFGHKIELVVAL-EEVYRYAFY-QN-KFHFI-ETIVLENKGKIIAS-GGNQKDFSLGLKKALEGFF------AENYRLRYSGSMVADVHH-VLVKKGGMFSYPQ------KKLRKLFEVFPLALMVEKAKGEAFYFDKGVKKRLLDQSVESYHEKSECYLASPHEAQILEKHLKGE |
2GQ1 Chain:A ((15-328)) | ------FSHATGELTALLSAIKLGAKIIHRDIN-------------------KLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVVYGSSTMLVYTTGCGVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVKKYIKFCQEEDKSTNRPYTSRYIGSLVADFHRNLL-KG-GIYLYPSTASHPDGKLRLLYECNPMAFLAEQAGGKAS---DGK-ERILDIIPETLHQRRSFFVGNDHMVEDVERFIREF |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GQ1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -151593 for 2215 contacts (-68.4/contact) +
2D Compatibility (PS) -28083 + (NN) -9019 + (LL) 820
1D Compatibility (HY) -15600 + (ID) 4000
Total energy: -207475.0 ( -93.67 by residue)
QMean score : 0.404
|
|
|