Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYKLIAIDIDGTLLTDDHKVTDEVKEAIRQAKLKGVKVVLCTGRPLVGVENYLTELELREEGDYVISFNGAFVQDTFTKE--VISHLTLGIEDLKDIYEVSLNSNLHMHFFDDKALYTP--NREIGKYTIVEAYLTGSQLIYKEIENVPE---DFIMSKAMFIEEAPELEVGIAKIPESFREKYHLVRSTPFYLEILNRDASKGNAVKELSEKLGIKQSEVICIGDQENDVTMLEFAGLGIAMGNAPERIKQLADYTTASNNDSGVAKAIQKFVLDK
1NF2 Chain:B ((1-264))
MYRVFVFDLDGTLLNDNLEISEKDRRNIEKLSRKCY-VVFASGRMLVSTLN--VEKKYFKRTFPTIAYNGAIV---YLPEEGVILNEKIPPEVAKDIIEYIKPLNVHWQAYIDDVLYSEKDNEEI------KSYARHSNVDYRVEPNLSELVSKMGTTKLLLIDTPERLDELKEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEKVKEASDIVTLTNNDSGVSYVLERISTD-
General information:
TITO was launched using:
RESULT:
Template:
1NF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155489 for 2142 contacts (-72.6/contact) +
2D Compatibility (PS) -28276 + (NN) -11428 + (LL) 924
1D Compatibility (HY) -18800 + (ID) 4350
Total energy: -217419.0 ( -101.50 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_1NF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NF2-query.scw
PDB file :
Tito_Scwrl_1NF2.pdb
: