Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYPFNHKEFVAMMEQYNLKSNSITIPEHTILNDLVTEN--RDCVYLLKSGILAGYIDFDNDK---IYSIFTSNFFMGYYTIFDNSSLVLTYQTL-TECE-LIIYKKKDIEYSLSLFPENFSFQYTIMRTIAKHGYYKSLLQ-YRDKKDQLAF-VFEMLVKI-LDIPVEDGVAVLPKSISTTVIKNYCTLSKAFFYSQLKELKEAGIISKVKLQWRINMEALSEKNNSIN
4RFA Chain:A ((10-225))
----EKLDTVLGYLKEFPDYYKYVTKKTYTLNEKIIFEDEKAKSIFFIVEGYAAVELEDNLRKTNYISIFVLPYNVLGIDAFSSYPK---HSITVMSESLMLYKIDADFLLNILSIKPDVNDFLLTSIADVFARHYALL--GMIAKTPKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLLTELVEEEFLINKKSPYRIDKDSLD-------
General information:
TITO was launched using:
RESULT:
Template:
4RFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121007 for 1393 contacts (-86.9/contact) +
2D Compatibility (PS) -21845 + (NN) -4623 + (LL) 1304
1D Compatibility (HY) -7200 + (ID) 1750
Total energy: -155121.0 ( -111.36 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_4RFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RFA-query.scw
PDB file :
Tito_Scwrl_4RFA.pdb
: