Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHSNQKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMIIVDALTNNVNRTASDVRAAYSKN-GGNMGVSGSVAYMFDNTAIFGVEGK-------DADELLELLMEADIDVRDILDEDGQAIIYAEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQNDIQLSGEDLEKFERLIDALEDLEDVQKVYHNVELED
1MW7 Chain:A ((21-240))
--------------------KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKE-GNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEE-LEEV-EDKIIIRGDYNSFKLLNEGFESLK-LPILKASLQRIATTPIELNDEQMELTEKLLDRIEDDDDVVALYTNIE---
General information:
TITO was launched using:
RESULT:
Template:
1MW7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50512 for 1572 contacts (-32.1/contact) +
2D Compatibility (PS) -23570 + (NN) -14171 + (LL) 1568
1D Compatibility (HY) -12400 + (ID) 3200
Total energy: -102285.0 ( -65.07 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_1MW7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MW7-query.scw
PDB file :
Tito_Scwrl_1MW7.pdb
: