Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGKLLRKPLNERIAPGVTLVQDINQGNSPLSYVGFRLIELEEDAVY--QETLDGLECCIVALTGKISVSEGDHVFSEIGTRANVFEKIPTDSVFISGGRAFQVKADA-EKARVALCYSPADR----NLPTT-LIKASDNSIEQR-GKYQNKRLVHNILPDVSEVASSLLVVEVYTDGGNFSSYPPHKHDHDNLPAESLLEESYYHEINPKQGFIFQRVYTDDRALDETMAVEHQNAVIVPEG-YHPVGVPDGYDSYYLNVMAGPKRVWEFHNDPDHEWILERD |
| 1SQ4 Chain:A ((66-268)) | ------------------------------ETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVH-AM-------QP--GGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEGRWSTTRFVDMSD--MRHDMHVNIVNFEPGGVIP-FAETHVME---------HGL-YVL---EGKAVYRLNQ------DWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNR------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SQ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -75976 for 1470 contacts (-51.7/contact) +
2D Compatibility (PS) -21057 + (NN) -4975 + (LL) 3968
1D Compatibility (HY) -4800 + (ID) 1250
Total energy: -104090.0 ( -70.81 by residue)
QMean score : 0.314
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