Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFDDNKERVIQEYVPGKQVTLAHLIANPNRDIYTKLGLEEGASAIGILTITPSEASIIASDIATKSGDVRIGFID---R----------FSGSVVLTG-DVSSVESALQQVVFSLHEILDFSIPKITRS
3GFH Chain:A ((9-116))
-----------------PSVTAMRVIASVNADFARELKLPPHIRSLGLISADSDDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDAMIAHIENGAAFQWA-----
General information:
TITO was launched using:
RESULT:
Template:
3GFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71353 for 713 contacts (-100.1/contact) +
2D Compatibility (PS) -10134 + (NN) -4453 + (LL) 1332
1D Compatibility (HY) -5600 + (ID) 1050
Total energy: -91258.0 ( -127.99 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_3GFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFH-query.scw
PDB file :
Tito_Scwrl_3GFH.pdb
: