Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VQRIAWDQFFMAQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACTKSIIQAGIKKVYFAKDYKNHPYALELFNIAGVELQKVEFDESVLQVNNWNGEKMHTLVKEAAVEVNIDPEKAEQLYQSISEKLN
2HVV Chain:B ((39-170))
---LSWQDYFMANAELISKRSTCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPFAIELMTQKEVE---------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2HVV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94678 for 1030 contacts (-91.9/contact) +
2D Compatibility (PS) -14211 + (NN) -6037 + (LL) 4652
1D Compatibility (HY) -14400 + (ID) 3500
Total energy: -128174.0 ( -124.44 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_2HVV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HVV-query.scw
PDB file :
Tito_Scwrl_2HVV.pdb
: