Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALFSKKDKYIRISPNKALGSSDKRSLPEVPDELFAKCPSCKHMIYQKDLG-LAKICPACSYNFRISAQERLLLTVDEDSFEELFTGIETKDPLNFP---NYREKLAATRQKTNLDEAVVTGLAKIKGQTTALAIMDSHFIMASMGTVVGEKLTRLFELATEKKLPIVIFTASGGARMQEGIMSLMQMAKVSAAVKRHSNQGLFYLTILTDPTTGGVTASFAMEGDIILAEPQALVGFAGRRVIETTVREDLPEGFQKAEFLLEHGFVDAIINRTELRDCIAQLIAFHGNEVGHE
2F9Y Chain:B ((23-281))
---------------------------------VWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYK------QKETGEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLPAPN
General information:
TITO was launched using:
RESULT:
Template:
2F9Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166870 for 2100 contacts (-79.5/contact) +
2D Compatibility (PS) -27348 + (NN) -16138 + (LL) 2220
1D Compatibility (HY) -21200 + (ID) 5750
Total energy: -235086.0 ( -111.95 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_2F9Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F9Y-query.scw
PDB file :
Tito_Scwrl_2F9Y.pdb
: