Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYVIFSFEEGDYLCDNKDKLLIFESRGLAYQYMQKHYLKPIPLQKTKRIM--YPMSYYQAPFKVQQVC--------------
1DU2 Chain:A ((1-76))
MLKNLAKLDQ----TEMDKVNVDLAAAGVAFK---ERYNMPVIAEAVEREQPEHLRSWFRERLIAHRLASVNLSRLPYEPKLK
General information:
TITO was launched using:
RESULT:
Template:
1DU2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13201 for 306 contacts (43.1/contact) +
2D Compatibility (PS) -5871 + (NN) -331 + (LL) 440
1D Compatibility (HY) 400 + (ID) 350
Total energy: 7489.0 ( 24.47 by residue)
QMean score : 0.014
(partial model without unconserved sides chains):
PDB file :
Tito_1DU2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DU2-query.scw
PDB file :
Tito_Scwrl_1DU2.pdb
: