Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIANQTIVDIVTQVVTPAIQAPFELVDVEYEKMGGDYVLSILIDKPGGITVEDTAQLTDVVSPLLDTIQPDPFPEQYMLEVSSPGLERPLKTAEALSNAVGSYINVSLYKSIDKVKIFEGDLLSFDGE-TLTIDYMDKTRHKTVDIPYQTVAKARLAVKL
1D3B Chain:B ((7-42))
---------------------------------------------------------------------------------------------SKMLQHIDYRMRCILQD----GRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGL
General information:
TITO was launched using:
RESULT:
Template:
1D3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17530 for 151 contacts (-116.1/contact) +
2D Compatibility (PS) -3587 + (NN) 630 + (LL) 6612
1D Compatibility (HY) -2800 + (ID) 350
Total energy: -17025.0 ( -112.75 by residue)
QMean score : 0.297
(partial model without unconserved sides chains):
PDB file :
Tito_1D3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D3B-query.scw
PDB file :
Tito_Scwrl_1D3B.pdb
: