Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKLLRKEVLITLKSQPQAYKSEVDCKLLEAFIKTKAYQNSCVIATYLSFDYEYNTQLLIKQALCDGKRVLVPKT-YPKGKMIFVDY-QKDNLRATPFGLLEPVNDR--AVEKASIDLIHVPGLIFNNKGFRIGYGAGYFDRYLSDFEGDTISTIYRCQRQDFVE-EKHDVAVKEVLCL
2JCB Chain:A ((11-190))
EEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSMENEVNTYPIIEKAWKEGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPALTEEVNADEIDLQIVPGVAYTERGERIGYGGGYYDRYLVHYKGKTLSLAYSFQMVEHIPVEPFDKNVEKIITE
General information:
TITO was launched using:
RESULT:
Template:
2JCB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89984 for 1303 contacts (-69.1/contact) +
2D Compatibility (PS) -19147 + (NN) -9564 + (LL) 0
1D Compatibility (HY) -9600 + (ID) 2800
Total energy: -131095.0 ( -100.61 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_2JCB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JCB-query.scw
PDB file :
Tito_Scwrl_2JCB.pdb
: