Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSFQTNYIHLADEILSGKTSISYEQALEILNSDENWWEIYAAALYLKNQVSRNNIRLNVLLSAKQGLCAENCGYCSQSKESTADIDKFGLLPQNVILKQAIVAHQNGASVFCIAMSGTKP--------S--KREIEQLCQVIPEIKKSLPLEICLTAGFLDREQLHQLKQAGIDRINHNLNTPEENYPNIATTHSFKDRCDTLERIHNEDIDVCSGFICGMGESDEGLITLAFRLKELNPYSIPVNFLLAVEGTPLGKYNYLTPIKCLKIMAMLRFVFPFKELRLSAGREVHFENFESLVTLLVDSTFLGNYLTEGGRNQHTDIEFLEKLQLNHTKKELI |
| 1NVM Chain:A ((26-191)) | -----------------------------------------------------------------------------------------QYTLDDVRAIARALDKAKVDSIEV-AHGDGLQGSSFNYGFGRHTDLE-YIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRVATHCTE-----------ADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMAD---SGGA-------MSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGAGAGNAPLEVFIAVAERLGWNH |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -90911 for 1261 contacts (-72.1/contact) +
2D Compatibility (PS) -17415 + (NN) -13397 + (LL) 7428
1D Compatibility (HY) 400 + (ID) 950
Total energy: -114845.0 ( -91.07 by residue)
QMean score : 0.490
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