Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKIKIVTDSSITIEPELIKELDITVVPLSVMIDGTLYSD-N-DLKAQGEFLNLMRGSKELPKTSQPPVGVFAEIYEKLMNEGAEHIIAIHLTHTLSGTIEASRQGANIAG-----ADVTVIDSTFTDQCQKFQVVEAAKLAKEGADLDTILARVEEVRQKSELFIGVSTLENLVKGGRIGRVTGLLSSLLNIKVIMELT-NHELVPIVKGRGLK-TFSKWLDNFVESAQTRKIAEIGISYCGKADMANNFKEKLAV--LGAPISVLETGSIIQTHTGEDAFAVMVRYE |
| 3PL5 Chain:A ((36-317)) | --TFKILTDSTADLPESWTQENDVQVLGLTVQLDGITYETVGPDRLTSRVLLEKIAA-GSKPTTSQVNVGQFESYFRQSAEN-GQEVLYIAFSSVLSGTYQSAVMARDIVLEEYPQASIEIVDTLAATGGEGYLAMLAAQAREEGKSLKETKELILDVGPRLRTFFLVDNLYHLMRGGRLS--------LVNIKPLLWLDASGKLVPIAKLRGRKKGMKEMLKRATADV---AHDTAVVAYANDSEAAENLKEQLLANEKIKNVVTLPLGPVISTHVGPNTLAVFTIGK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PL5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145164 for 2314 contacts (-62.7/contact) +
2D Compatibility (PS) -29366 + (NN) -11117 + (LL) 720
1D Compatibility (HY) -12800 + (ID) 3550
Total energy: -201277.0 ( -86.98 by residue)
QMean score : 0.495
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