Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKGLLVMDVDSTLIMEEAIDLLAIEAGVGKQVAALTDAAMRGELDFEEALKKRVALLKGLPVTILTDIL-SSIHFTPGAYELIKECHKRQMKVGLVSGGFHETIDILAKQLQVD--YVKANRLGVKGGFLTGEVEGEIVTKEVK----KIKLKEWASENHLDLSQTIAMGDGANDLPMIKSAGVGIAFCAKPI---VREEAAYQINEKNLLKVFDIIDANEN
1L8O Chain:B ((17-215))
-----VCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKF---YFNGEYAGFDETQPTAESGGKGKVIKFLKEK-FHFKKIIMIGDGATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITDFVELLGELEE-----
General information:
TITO was launched using:
RESULT:
Template:
1L8O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72711 for 1492 contacts (-48.7/contact) +
2D Compatibility (PS) -20218 + (NN) -8617 + (LL) 644
1D Compatibility (HY) -14000 + (ID) 3300
Total energy: -118202.0 ( -79.22 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1L8O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L8O-query.scw
PDB file :
Tito_Scwrl_1L8O.pdb
: