Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNYRKLIVLLLLTFFVIFMGAYAYTHIVEKRSLTSNTIEKTLPVVNQIKPQTIKEYQNYLTKVAKRNVLPVDIPQALNNEKVEITATDGMQTFTWNDKNNPKQ---KVIFYVHGGSYIHQASELQYIFVNKLAKKLDAKVVFPIYPKAPTYNYSDAIPKIKKLYQNTLASVTSPKQIILVGESAGGGLALGLADNLVTEHIKQPKEIILISPWLDIATNNPKIEKVQKKDPLLKAW--QLQQVAPYWANGKKNFKNPQVSPLYSSQFNKMAPISFFIGTHDIFYPDNQLLHQKLAKENIKHHYIVGQKMNHVYPVLPI--PEAETAFKQMLKIINH-- |
| 4Q3O Chain:A ((31-347)) | ----EVPIPQSISAEFKAALAQYPTPSVEEARSFV---------------PTTAAQWRDYVQATNKMQKTKIKNMRKHYGVTVELLDIKGVTVRKITPKSLSPEFKDHVYIDIHGGAYVLFAGLPSIEEGILIAHRLGIVVYSVDYRMPPAYPFPAALDDVKHVYR-VLSQQYDANHIFMGGTSAGGGLLLAFVQGLIENGVATPRAIYAGTPWADLTKTGDSLYTNEGIDRILITYDGTLGASARLYA-GNTPLTHPKLSPIYGD-FTDFPPTFLVTGTRDMFLSDTVRVNRKMRDAGVTTVLDVYEGLSHADYLVSHQTPESQSVYRQLKRFLVGFT |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q3O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149248 for 2722 contacts (-54.8/contact) +
2D Compatibility (PS) -32501 + (NN) -13346 + (LL) 1340
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -211955.0 ( -77.87 by residue)
QMean score : 0.432
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