Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--M-TNHKTKKLTVLAIMIALDVFLTPI----FRIEGMAFMSSVVNIIAGVIMGPIYALVMALVTAFIRILTQAGVASVAPLAILGAGPGAFLAGWLYQFYAKDWMSWVGEFIGTGIIGALLSAPIMVWFWTWTADGNHEVLAKASAAQSI--FLFMPRFIGATIIGGVIALLLLQGLK-RVPVFMTIQALFKGE-KVK
3KKC Chain:A ((1-177))
SNAMVKDRQIQKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHHLFKQ----------GRDVTFEEYLVHILKHFEQN-QDSIATLLLSD------DPYFLLRFRSELEHDVYPRLREEYITKVDIPEDFLKQFLLSSFIE-TLKWWLHQRQKMTVEDLLKYYL----TMVER
General information:
TITO was launched using:
RESULT:
Template:
3KKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134034 for 1085 contacts (-123.5/contact) +
2D Compatibility (PS) -17506 + (NN) -7649 + (LL) 1772
1D Compatibility (HY) -4400 + (ID) 900
Total energy: -162717.0 ( -149.97 by residue)
QMean score : 0.255
(partial model without unconserved sides chains):
PDB file :
Tito_3KKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KKC-query.scw
PDB file :
Tito_Scwrl_3KKC.pdb
: