Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKDEMIAKGAKYIQSIYQDPFIQGIIKGRLDHDVICHYLQADNIYLGKFADIYALCLAKSDNLRDKQFFLEQIDFTLNRELADGEGPHQALAAYTNRSYQDIIEKGVWYPSADHYIKHMYF--HFYENGIAGALAAMSPCPWIYHQLAKKIIEENQFLNGNPFNNWITFYANDTVEELMENYFRMMDYYAQNLSKEKQADLVDAFVKSCQMRDVFFKWQ
4FN6 Chain:B ((15-212))
-------------INDIYEDDFIQKMLLGNIQADALRHYLQADAAYLKEFTNLYALLIPKMNSMNDVKFLVEQIEFMVEGEVL----AHDILAQIVGESYEEIIKTKVWPPSGDHYIKHMYFQAHSRENAIY-TIAAMAPCPYIYAELAKRSQSDHKLNREKDTAKWFDFYSTE-MDDIINVFESLMNKLAESMSDKELEQVKQVFLESCIHERRFFNMA
General information:
TITO was launched using:
RESULT:
Template:
4FN6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142176 for 1411 contacts (-100.8/contact) +
2D Compatibility (PS) -21113 + (NN) -6917 + (LL) 788
1D Compatibility (HY) -20400 + (ID) 3750
Total energy: -193568.0 ( -137.18 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_4FN6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FN6-query.scw
PDB file :
Tito_Scwrl_4FN6.pdb
: