Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIIKRDGQIVEFDPEKIYQAILKAAQTVYVL-DESLRQDLAQVTKKVILDLEDAQVERPTINMIQSLVENRLLDAGYIHTAEHYISYRLQRDLERNGYDDQITVHLHFEKIK
1QM4 Chain:A ((17-116))
GAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMID-YQRVVRDTIKHIGYDD-----------SAKGFDFKTCNVLVALEQQSPE
General information:
TITO was launched using:
RESULT:
Template:
1QM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28719 for 666 contacts (-43.1/contact) +
2D Compatibility (PS) -10391 + (NN) 509 + (LL) 1308
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -40143.0 ( -60.27 by residue)
QMean score : 0.306
(partial model without unconserved sides chains):
PDB file :
Tito_1QM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QM4-query.scw
PDB file :
Tito_Scwrl_1QM4.pdb
: