Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQLYYKYGTMNSGKTIEILKVAHNYEEQGKPVVIMTSALDTRDEFGVVSSRIGMRREAVPISDDMDIFSYIQNLPQKPYCVLIDECQFLSKKNVYDLARVVDDLDVPVMAFGLKNDFQNNLFEGSKHLLLLADKIDEIKTICQYCSK-KATMVLRTENGKPVYEGDQIQIGGNETYIPVCRKHYFNPDI
2QPO Chain:C ((10-177))
--------GPMYSGKTTELLSFVEIYKLGKKKVAVFKP-------------------EAHVIERPEEMRKYIE---EDTRGVFIDEVQFFN-PSLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKV------------------KYIAVCRDCYNTLK-
General information:
TITO was launched using:
RESULT:
Template:
2QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87134 for 990 contacts (-88.0/contact) +
2D Compatibility (PS) -14778 + (NN) -5492 + (LL) 2636
1D Compatibility (HY) -10000 + (ID) 2300
Total energy: -117068.0 ( -118.25 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_2QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QPO-query.scw
PDB file :
Tito_Scwrl_2QPO.pdb
: