Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQTLRRLDVKKQFIEKIEPFAHRQTLKSKAVNSSKTTMSIQRYNHSGTKIQLRIGYSKVLIRIFSNGKINLTHYDLFFDREETLEITDAFDNGVYTQDEVDGFIKQAKTFIKQALKGEV
1YTB Chain:A ((102-126))
---------------------------------------------------VIMRIREPKTTALIFASGKMVVTGA---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YTB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15670 for 111 contacts (-141.2/contact) +
2D Compatibility (PS) -2813 + (NN) -980 + (LL) 6984
1D Compatibility (HY) -800 + (ID) 400
Total energy: -13679.0 ( -123.23 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_1YTB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YTB-query.scw
PDB file :
Tito_Scwrl_1YTB.pdb
: